FastQCFastQC Report
Wed 31 May 2023
EGAF00007931214

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931214
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences364611
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG53101.456346626953109No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA25340.6949872603953254No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12950.35517304743960004No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11930.3271980274868284No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10730.2942862393070972No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC10650.29209212009511504No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10560.2896237359816352No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10200.27975019952771585No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG10140.2781046101187293No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9620.26384283524084573No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8230.22572001393265698No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8110.22242883511468386No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8090.22188030531168834No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7760.21282956356226224No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7280.19966484829036973No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6990.19171116614693468No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6910.18951704693495258No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6780.1859516032154817No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5480.1502971660207728No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5290.14508613289231537No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4840.13274421232491615No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG4500.12341920567399227No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4420.1212250864620102No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG4240.11628831823505051No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT4170.11436846392456619No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4080.11190007981108634No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG3690.10120374865267368No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)