FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007931218

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931218
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences401230
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG19120.476534655933006No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA18310.45634673379358476No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG17120.4266879346011016No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG16270.40550307803504226No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG14290.3561548239164569No Hit
CGCACCATCTGGGAATCCGCTGCCGATATCG12950.322757520624081No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG12190.3038157665179573No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG11610.289360217331705No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG11360.28312937716521697No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9160.22829798370012214No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTC9000.2243102459935698No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7390.18418363532138673No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG6960.17346659023502728No Hit
TCTGCTACCGGTCGTTCCGGCACCGTACTGG6180.15402636891558458No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG5940.14804476235575606No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5380.13408768038282282No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC4960.1236198689031229No Hit
ATGGGTCGCGTAGCAGACACTATCGCTCGTG4740.1181367295566134No Hit
GAAACCACTATCGCAGATAATAGCAAACGCT4540.11315205742342298No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT4480.11165665578346586No Hit
CTGATGCGTATGAAGGAAGTATCTAGCGTTT4300.10717045086359445No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC4210.10492734840365876No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTG4180.10417964758368019No Hit
GTTGCACGCGTCGCCGACACCCTGCCAACGG4120.10268424594372305No Hit

[OK]Adapter Content

Adapter graph