FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007931222

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931222
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences390565
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG52431.3424141948203243No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA43751.1201720584281747No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT26140.6692868024528568No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC21610.553300987031608No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA19860.5084941046944811No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA15360.39327640725615454No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA13720.35128595752307556No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT13370.3423245810556501No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT13090.33515547988170985No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11550.29572542342503805No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG11500.29444522678683444No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9270.23734845672295263No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7670.19638216430043656No Hit
GCACTGGTAAGCGCTATGGAACGTACTGAAC7260.1858845518671668No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6930.17743525405502286No Hit
CGCGAAATGATCCGTTATATGGCACTGGTTT6920.17717921472738213No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA6910.1769231753997414No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT6390.16360913036242367No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5980.1531115179291539No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5710.14619845608285434No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5690.14568637742757287No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5600.14338202347880635No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5510.1410776695300398No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC5280.13518876499430313No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG5180.13262837171789588No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG5030.12878778180328498No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT4720.12085056264642248No Hit
ATGTCCAACATGGACATCGATGGTATTAACA4630.11854620869765596No Hit
CCGGCTGCCTCCCCGCCGCGTACCCCTGCCT4460.11419354012776363No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)