FastQCFastQC Report
Sun 21 May 2023
EGAF00007931224

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931224
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences404734
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT67051.656643622725049No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG53621.32482074646558No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA21300.5262715758992326No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC18460.4561020324460016No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG16700.41261668157357667No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT12950.3199632351124442No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC11650.28784337367258495No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9040.2233565749356367No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA8990.22212119564948832No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8410.2077907959301665No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8400.20754372007293678No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8370.20680249250124774No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7020.17344725177524004No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7010.17320017591801035No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG6850.16924696220233537No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6480.16010515548483695No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6300.1556577900547026No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5880.14528060405105575No Hit
CCGGCCGTGGCACCAACCAGCGCTGCCTCCC5650.13959785933477298No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG5530.13663294904801673No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG5520.13638587319078704No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5500.13589172147632766No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5300.13095020433173393No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5280.13045605261727455No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5170.127738218187748No Hit
ATGTCCAACATGGACATCGATGGTATTAACA5130.12674991475882927No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5130.12674991475882927No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT4860.12007886661362771No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT4840.11958471489916835No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4690.11587857704072305No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG4640.1146431977545746No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG4530.11192536332504807No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC4460.11019583232444025No Hit
GCACCGACCTCCGCGGCGAGCCGTAAACCAG4440.10970168060998088No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA4390.10846630132383245No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)