FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007931225

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931225
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences407502
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT14110.3462559692958562No Hit
CATCGGAGAAGACAGTTTTGCTTTGCGAATACGGCTCGGGGTGG6510.15975381715917958No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG6500.15950841959057868No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA6110.14993791441514398No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5960.1462569508861306No Hit
ACCGCTGAACAGATCGCCGCGGGTTTCGGTCAGTGGACGCACGT5790.14208519221991547No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC5490.1347232651618888No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA4900.12024480861443626No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT4770.11705464022262468No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA4390.10772953261579084No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT4290.10527555692978194No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG4180.10257618367517216No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)