FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007931226

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931226
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences407502
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG18640.4574210678720595No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14150.34723755957025976No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12300.3018390093790951No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7080.17374147856943034No Hit
GAAGAGGAAGATGACGACTCCAGCGATACTG6600.1619623952765876No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6250.15337348037555645No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG6240.15312808280695556No Hit
CCGACCAGCGGTCCGCTGAACATCCCGCAAC6140.15067410712094664No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4820.11828162806562914No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4390.10772953261579084No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC4380.10748413504718995No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA4270.10478476179258016No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT4130.1013491958321677No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)