FastQCFastQC Report
Wed 31 May 2023
EGAF00007931227

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931227
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences372243
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT12700.34117498515754496No Hit
CATCGGAGAAGACAGTTTTGCTTTGCGAATACGGCTCGGGGTGG5940.1595731820343163No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG5440.14614109600449168No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC5230.14049961987196535No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5170.1388877695483864No Hit
ACCGCTGAACAGATCGCCGCGGGTTTCGGTCAGTGGACGCACGT5150.13835048610719342No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA4870.13082851793049163No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA4390.11793371534186002No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT4080.10960582200336877No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG4020.10799397167978982No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA4020.10799397167978982No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT3910.10503891275322841No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG3910.10503891275322841No Hit
GCGAATGTGACGAGTCAGTTCATCAGAACGGGAGAAGCGACGGT3730.10020336178249153No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)