FastQCFastQC Report
Wed 31 May 2023
EGAF00007931228

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931228
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences372243
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG56081.5065427691051276No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12380.3325784500984572No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10820.29067034168540445No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6130.16467737472564964No Hit
GAAGAGGAAGATGACGACTCCAGCGATACTG5760.15473763106357943No Hit
CCGACCAGCGGTCCGCTGAACATCCCGCAAC5500.14775294632807062No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5180.1391564112689829No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG5140.13808184438659693No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4250.11417273125350913No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4140.11121767232694772No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC4050.10879989684157929No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC4040.1085312551209828No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA3880.10423298759143892No Hit
CTGAACACCTCTTACCAGAGCCAGCTGATCA3760.10100928694428103No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT3730.10020336178249153No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)