FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007931234

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931234
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences355790
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG53651.5079119705444222No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT42371.190871019421569No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA25560.7184013041400826No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11340.31872733916074086No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10320.2900587425166531No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG9550.2684167626970966No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9020.2535203350290902No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8780.24677478287754012No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8740.24565052418561514No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7700.21641979819556478No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG7510.211079569408921No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6270.1762275499592456No Hit
GGCGCCGAAACCGAAGAAGGTGGTGACGATC5980.1680766744427893No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5600.15739621686950167No Hit
TCTGCCTGCAACGATTTCAGCGTTCGTATGC5440.15289918210180165No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5270.14812108266112034No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTG4560.12816549087945134No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT3870.1087720284437449No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG3670.10315073498411984No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)