FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007931236

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931236
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences369620
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG49491.3389426979059573No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT45871.2410042746604621No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA27360.7402196850819761No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11080.29976732860775934No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10990.2973323954331476No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG9380.2537741464206482No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9240.2499864725934744No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9130.2470104431578378No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8700.23537687354580378No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG7780.2104864455386613No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7520.20345219414533844No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG7360.19912342405713976No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5900.1596233970023267No Hit
GGCGCCGAAACCGAAGAAGGTGGTGACGATC5830.15772956008873978No Hit
TCTGCCTGCAACGATTTCAGCGTTCGTATGC5730.15502407878361563No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5560.1504247605649045No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTG4930.13338022834262214No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT3870.10470212650830583No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG3840.10389048211676857No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)