FastQCFastQC Report
Wed 31 May 2023
EGAF00007931238

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931238
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences438392
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA40530.9245150458949981No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC35310.8054435299914233No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG29680.6770196536433146No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG28450.6489625723097137No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT26820.6117812368838847No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG19620.44754466322378145No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC18550.4231372835270717No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC18130.4135568167302323No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA16930.3861840544535484No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG14810.3378255077647402No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA14150.32277048851256407No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA13460.3070311502034709No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13100.2988193215204657No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG11420.2604974543331083No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11080.2527418383547145No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG9060.20666435518896328No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8730.19913684556287525No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7300.1665176371831603No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC7030.1603587656709064No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6550.14940966076023285No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT6510.14849723535101006No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCTG6420.14644427818025876No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5900.13458274786036242No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5570.12705523823427434No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5200.11861530319896348No Hit
TGCCCGGACTTCAAGCTGCGTCTGATGAAGG5150.11747477143743498No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG4890.11154400627748681No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT4600.10492892206062154No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4490.10241975218525887No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC4490.10241975218525887No Hit
CTGGAAGAGGTCATCGTAGAAAAAACCAAAC4480.10219164583295315No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG4400.10036679501450757No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)