FastQCFastQC Report
Wed 31 May 2023
EGAF00007931240

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931240
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences447116
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA41890.9368933341683143No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC36630.8192504853326654No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG31600.7067517154384991No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG29680.6638098390574259No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT28670.641220622836132No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC18960.4240510292630995No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC18560.4151048050170425No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA18070.4041456803156228No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA15200.33995652135016413No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG14870.33257588634716717No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14130.31602537149196186No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG13870.31021032573202484No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA13820.3090920477012677No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG11800.26391361525868007No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11330.2534018017695632No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG9010.20151370114243283No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8810.19704058901940436No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC7740.17310943916120203No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT6950.15544064627523954No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6920.15476967945678527No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6830.15275677900142245No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6280.14045572066309414No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCTG5860.13106218520473434No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5810.12994390717397722No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5650.12636541747555444No Hit
TGCCCGGACTTCAAGCTGCGTCTGATGAAGG5250.1174191932294975No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4790.107131035346532No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG4720.10556544610347202No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG4610.10310523443580637No Hit
GCGGACATCCCATACAAAGTGGAGCCGAACT4570.10221061201120067No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC4480.10019771155583787No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)