FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007931242

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931242
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences393712
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG18590.47217255252570406No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11290.2867578331369123No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA7290.1851607266225058No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6790.172461088308205No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6190.157221522331044No Hit
TCCTCCAACAGCCCGCACGTGGTTAAAACCG6140.15595155849961392No Hit
ACCCAGGGCGAAGTAAACGTGACGGGTGTTA5860.14883976104360547No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5490.13944202869102287No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG4770.1211545495184297No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT4540.11531271589385135No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG4410.11201080993213314No Hit
ACCACTCCGACGAAAAGCCACTTCGCAAACC4260.10820091843784288No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4150.1054069980086967No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)