FastQCFastQC Report
Wed 31 May 2023
EGAF00007931244

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931244
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences376041
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG49151.3070383282673963No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10760.28613901143758264No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6170.16407785321281457No Hit
TCCTCCAACAGCCCGCACGTGGTTAAAACCG6040.16062078337202593No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5750.15290885834257437No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5370.14280357726949988No Hit
ACCCAGGGCGAAGTAAACGTGACGGGTGTTA5270.14014429277658555No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5180.13775093673296263No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG4690.12472044271768239No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4240.11275366249956786No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG4150.11036030645594497No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4120.10956252110807066No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT3780.10052095383216192No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)