FastQCFastQC Report
Sun 21 May 2023
EGAF00007931250

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931250
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences466585
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT22270.4772978128315312No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21940.4702251465435022No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT20710.44386339037903066No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC19810.424574300502588No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG18180.3896396155041418No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG16630.3564195162724906No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG12550.2689756421659505No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC11650.24968655228950778No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC11610.24882925940611036No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA11600.24861493618526098No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG10420.22332479612503617No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG9870.21153701897832122No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG9760.2091794635489782No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG9050.19396251486867344No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC8870.1901046968933849No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG8200.1757450410964776No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT7490.16052809241617283No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6840.14659708306096422No Hit
CTGATGCGTATGAAGGAAGTATCTAGCGTTT6500.1393100935520859No Hit
TTCATCTCTGGTACCGACGGTCTGCTGCCAG6080.13030851827641265No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC6000.12859393250961776No Hit
GCGCTGACTCTGTCCCTGCCGAAACAGCAGG5950.12752231640537096No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5900.12645070030112412No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG5610.1202353268964926No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5290.113376983829313No Hit
GCACTGACCCTGAGCCTGCCGAAACAGCAGG4820.10330379244939292No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG4740.10158920668259803No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)