FastQCFastQC Report
Sun 21 May 2023
EGAF00007931251

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931251
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences475681
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT20110.4227623133991057No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG17570.3693651838101585No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG16490.34666089248887383No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT12740.26782654762330216No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG11870.24953697961448956No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG10920.22956561224854471No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG10270.21590099247184563No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA9820.206440871087977No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG9530.2003443484183728No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG9480.19929322382016518No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG9300.19550917526661776No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG8920.18752062832023983No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA8820.18541837912382458No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG8800.18499792928454153No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA7450.15661756513293573No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG7180.15094149230261455No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA6880.14463474471336885No Hit
CGGCGGCAGCGGCAGGCCTGCGCGGTTGGTCAGGCTACCGCTGA6640.13958934664197226No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG6530.13727687252591547No Hit
CTGTGCGCGGTCGCCGCTACCCGGAGACACCAGACCGCCCGGCA6070.12760652622240534No Hit
CTGAACGACGTGACGGGTCTGTACAGTGTCAGACGGGGCCAGCG6060.12739630130276383No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5380.11310100676714017No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC5250.11036808281180036No Hit
TACGTGACGGGTCTGCACGGTGTCAGACGGCGCCAGCGGGTTGG4990.1049022349011207No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG4820.1013284112672148No Hit
CTGGACTACGTGACGCGTCTGAACGGTATCGCTCGGCGCCAGCG4810.10111818634757326No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)