FastQCFastQC Report
Wed 31 May 2023
EGAF00007931252

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931252
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences475681
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT22910.48162529089873257No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT20500.43096108526512517No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC19350.4067852195063499No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG18740.39396149940821684No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG17430.36642203493517717No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG14720.309451081712324No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA13430.2823320670785674No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG12790.2688776722215098No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC12150.2554232773644522No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC11680.24554270614130058No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG10520.22115661546288373No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG10380.2182134665879024No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG9960.20938401996295838No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC9270.1948785005076932No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG8710.1831059050077678No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG8590.18058320597206953No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT7660.16103228844540773No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6970.14652676899014255No Hit
TTCATCTCTGGTACCGACGGTCTGCTGCCAG6730.14148137091874596No Hit
CTGATGCGTATGAAGGAAGTATCTAGCGTTT6590.13853822204376462No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC6220.13075990001702822No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG6120.12865765082061298No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5980.1257145019456316No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG5410.11373168152606473No Hit
GCGCTGACTCTGTCCCTGCCGAAACAGCAGG5390.11331123168678169No Hit
GCACTGACCCTGAGCCTGCCGAAACAGCAGG5160.10847605853502662No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5070.1065840342582529No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5050.10616358441896986No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)