FastQCFastQC Report
Wed 31 May 2023
EGAF00007931253

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931253
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences341092
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT16530.4846199852239279No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG10630.3116461247991744No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA10110.2964009709990267No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT9150.26825607167567694No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA9000.26385843115640356No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT8990.2635652551217853No Hit
GATACCCGGGCACATGTAGCCATCCAGGTCACAGGTTTCAGTGG7610.22310696234447014No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT7460.2187093218251967No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC6690.1961347671595933No Hit
GATCAGAACACGATCGGCGTCACGAGCCAGTGCTTCCTCAGACG5970.17502609266708102No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5850.1715079802516623No Hit
TTTGTCGATGGTCTGCTCCAGGTTACCAAAGAAGCCTGCTTTTG5180.15186518593224116No Hit
GTCTTCCGCCGGAACGGTGGACTGACGGGTACCACCGAAACGCG5080.1489334255860589No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA4670.1369132081667116No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC4640.13603368006285696No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG4080.11961582212423628No Hit
CTGGGAGGTCAGGAACACCAGGTAGCTGCGCTGAGCTTCACGGA3930.11521818160496289No Hit
GTCGTGACGTTTCAGCGGGAATGGGCCACCCAGATCGTCGATGG3700.10847513280874369No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG3620.10612972453179786No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA3580.10495702039332497No Hit

[OK]Adapter Content

Adapter graph