FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007931254

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931254
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences341092
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG50691.4861093194797885No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT22140.6490917406447527No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA16690.4893108017778195No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16310.4781701124623268No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG9820.28789886599509806No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9270.27177418409109566No Hit
AAAAAACTGCCAGCAGGTGGTCGCCTGCCGG7670.22486601855217944No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA7430.21782979372134206No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6940.20346416802504894No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6510.19085759853646522No Hit
GCGGTGGCAGAAAAACTGCGTACCAAATGGG5920.1735602124939899No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5880.172387508355517No Hit
GAACCGATCTACGCTACCATCGACGACCTGG5380.15772870662460567No Hit
GGCGCCGCAGGCGATGGCGACGGTGGCGGTT4990.14629484127449485No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4750.13925861644365742No Hit
GTGAACGCAAAAATTGATCGCCTGAACCAGA4420.12958380730125596No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT3990.11697723781267223No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC3910.11463182953572644No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC3850.11287277332801707No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC3490.10231843608176094No Hit

[OK]Adapter Content

Adapter graph