FastQCFastQC Report
Sun 21 May 2023
EGAF00007931255

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931255
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences354660
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT18140.5114757796199177No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA11100.31297580781593637No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG10880.30677268369706195No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT9870.278294704787684No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT9730.27434726216658206No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA9690.27321942141769584No Hit
GATACCCGGGCACATGTAGCCATCCAGGTCACAGGTTTCAGTGG8310.23430891558111994No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT7990.22528618959002988No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC7360.20752269779507135No Hit
GATCAGAACACGATCGGCGTCACGAGCCAGTGCTTCCTCAGACG6140.1731235549540405No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG6020.16974003270738172No Hit
GTCTTCCGCCGGAACGGTGGACTGACGGGTACCACCGAAACGCG5240.1477471381040997No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC5230.14746517791687813No Hit
TTTGTCGATGGTCTGCTCCAGGTTACCAAAGAAGCCTGCTTTTG5130.1446455760446625No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG4950.13957029267467433No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA4770.1344950093046862No Hit
CTGGGAGGTCAGGAACACCAGGTAGCTGCGCTGAGCTTCACGGA4460.12575424350081768No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG4110.11588563694806292No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC3770.10629899058252974No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG3700.1043252692719788No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG3660.10319742852309255No Hit
GTCGTGACGTTTCAGCGGGAATGGGCCACCCAGATCGTCGATGG3620.10206958777420629No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)