FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007931258

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931258
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences477059
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT40760.8544016568181293No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG14890.312120723013296No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA14120.29598016178292413No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC9480.19871755904405955No Hit
GGTCCGGGCATTAACCCAATCAGCAAAACCG8880.18614049834506843No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8160.1710480255062791No Hit
CGTCCTTCCGATATCGACACCGCGGCACGCG6350.13310722573098926No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6160.1291244898429754No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5400.11319354629091999No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5100.10690501594142444No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA4930.10334151541004362No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG4840.10145495630519495No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC4830.10124533862687843No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)