FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007931262

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931262
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences430351
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG20770.48262929562148105No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7970.18519766423221976No Hit
ATGTCCAACATGGACATCGATGGTATTAACA7200.1673052926564595No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT6470.15034239492879067No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5640.13105581258089327No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT5610.1303587071948247No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5480.1273379171885275No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5020.11664896793547593No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG4760.11060738792288155No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)