FastQCFastQC Report
Sun 21 May 2023
EGAF00007931264

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931264
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences439562
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG14040.3194088660985253No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8180.18609433936509523No Hit
ATGTCCAACATGGACATCGATGGTATTAACA7210.16402691770444214No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT7120.16197942497304132No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5930.13490702108007516No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT5850.13308702754105223No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5790.13172203238678504No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA4880.11101960588039914No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG4860.1105646074956434No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4710.10715211960997538No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG4400.1000996446462615No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)