FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007931276

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931276
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences526169
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT20090.38181648861867573No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12530.23813641624649112No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA11530.21913111566815982No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9110.17313828826859812No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6060.11517212150468767No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6010.11422185647577109No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5840.11099095537745478No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)