FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007931278

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931278
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences550960
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTGAACAGAAACAGCTGCTGCAGGGTGACG28410.5156454189051837No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG21990.39912153332365324No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG21700.3938579933207492No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT20890.37915638158850007No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA20700.37570785537970086No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG18550.33668505880644695No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC14380.2609989835922753No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG14370.2608174822128648No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC13960.253375925657035No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13270.24085233047771165No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG12200.2214316828807899No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12000.21780165529258025No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG11490.2085450849426456No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC10950.19874401045447948No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA10940.19856250907506895No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG10800.1960214897633222No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC10580.19202845941629157No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG10300.18694642079279802No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC10280.18658341803397704No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA9910.17986786699578916No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9800.17787135182227384No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC9200.16698126905764485No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG8870.16099172353709887No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC8550.15518367939596342No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8470.15373166836067956No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8320.15100914766952228No Hit
GTTGCACGCGTCGCCGACACCCTGCCAACGG8170.14828662697836503No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8070.1464716131842602No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7720.1401190649048933No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC7650.13884855524901987No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7590.137759546972557No Hit
ATGGGTCGCGTAGCAGACACTATCGCTCGTG7590.137759546972557No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG7430.13485552490198927No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC7280.132133004210832No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTG6770.12287643386089733No Hit
GCGCTGACTCTGTCCCTGCCGAAACAGCAGG6570.11924640627268768No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT6460.11724989109917236No Hit
GACGCTAACGGCAACAACCTGACTTTCGAAC6440.1168868883403514No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA6300.11434586902860462No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6160.11180484971685783No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6030.10944533178452157No Hit
GCACTGACCCTGAGCCTGCCGAAACAGCAGG5880.1067228110933643No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)