FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007931280

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931280
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences526742
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43890.8332352460977102No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG26910.5108762923784319No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG21020.3990568437679167No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG20980.3982974587179302No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT20000.37969252499326045No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA19200.36450482399353007No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG18040.34248265754392093No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC13800.2619878422453497No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG13640.25895030204540365No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC13440.255153376795471No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12050.22876474630843946No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG11370.21585520045866857No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC10890.2067425798588303No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10690.2029456546088977No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG10440.19819949804648196No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG10300.19554165037152915No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG9880.18756810734667065No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA9750.18510010593421447No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9750.18510010593421447No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC9720.18453056714672458No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA9610.18244225825926166No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC8750.16611547968455145No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG8180.15529424272224351No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7980.15149731747231093No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC7850.14902931605985473No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7790.14789023848487495No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7650.14523239080992212No Hit
GTTGCACGCGTCGCCGACACCCTGCCAACGG7480.1420050043474794No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7220.137069001522567No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC7190.13649946273507713No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG6900.13099392112267486No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6780.1287157659727153No Hit
ATGGGTCGCGTAGCAGACACTATCGCTCGTG6460.12264068557282314No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6420.12188130052283662No Hit
GACGCTAACGGCAACAACCTGACTTTCGAAC6400.12150160799784336No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA6330.12017268416036693No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT6290.11941329911038041No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTG6140.11656560517293096No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5930.11257883366050173No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5900.11200929487301184No Hit
GCGCTGACTCTGTCCCTGCCGAAACAGCAGG5660.10745298457309271No Hit
GCACTGACCCTGAGCCTGCCGAAACAGCAGG5630.10688344578560281No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)