FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007931282

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931282
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences534214
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG42730.7998667200784704No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG26530.496617460418484No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT22130.41425346396762347No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG21710.4063914461245868No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG20680.3871107833190444No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA19350.3622143934827616No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG17260.3230914951686028No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC13940.26094411602840806No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC13500.252707716383322No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG13340.24971266196692712No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13020.24372255313413727No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG11990.22444189032859493No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10980.20553560932510193No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG10830.20272774580973166No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC10760.2014174095025589No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG10430.19524010976874434No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG10300.19280662805542348No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC10160.19018595544107791No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA9740.18232393759804122No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC9690.18138798309291781No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA9540.17858011957754757No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9170.17165405623963428No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG8690.16266889299044954No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC8440.15798912046483246No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7830.14657047550232677No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7690.1439498028879812No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7610.14245227567978377No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7470.13983160306543818No Hit
GTTGCACGCGTCGCCGACACCCTGCCAACGG7410.1387084576592901No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC7310.13683654864904327No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG7230.1353390214408458No Hit
ATGGGTCGCGTAGCAGACACTATCGCTCGTG6940.12991048531113No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6810.1274770035978091No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6610.12373318557731545No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTG6530.122235658369118No Hit
GCGCTGACTCTGTCCCTGCCGAAACAGCAGG6480.12129970386399458No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA6440.12055094025989585No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6290.1177430767445256No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT6020.11268892241685916No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5990.11212734971378512No Hit
GACGCTAACGGCAACAACCTGACTTTCGAAC5870.10988105890148891No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)