FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007931288

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931288
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences532543
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA41630.7817209126774739No Hit
ACCGATTGCGACCTGGATCCGATGGAAGGCA22020.41348773714047504No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT20590.3866354454006531No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA19580.3676698407452544No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT18860.354149805743386No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA16580.3113363615708027No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC15270.28673740899795885No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC12810.24054395607490847No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA12740.2392295082275046No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC10430.1958527292631769No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC9370.17594823328820397No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9250.17369489412122588No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA8580.1611137504389317No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA7670.14402592842268136No Hit
TCTGGCTACGAAATTGACCACATCGACCTGG7290.13689035439391747No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6560.12318254112813425No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6450.12111698022507103No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG5720.1074091669592878No Hit
GTTCCGGAAGAAATCATCCCGGTTACCAAAC5700.10703361043145812No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA5680.10665805390362845No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5670.10647027563971359No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5500.10327804515316134No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC5450.10233915383358716No Hit

[OK]Adapter Content

Adapter graph