FastQCFastQC Report
Sun 21 May 2023
EGAF00007931289

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931289
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences518329
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT19770.38141797970015184No Hit
GATAACGAAGCTAGCGGAGGTCGGGGTAATGACCACAGAGGACG19510.37640186059433295No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT18760.3619322862506246No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC17290.3335719205369563No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG14370.2772370444254518No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC12260.2365293086051523No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG11650.22476072147226953No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT11450.22090216831394732No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG9980.19254180260027898No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA9510.18347420267822173No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC8890.17151268788742285No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG8500.1639885092286945No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT8010.15453505399080505No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG7840.15125528380623118No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7640.14739673064790895No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG7300.14083719027876115No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT6260.12077271385548562No Hit
TTCCGGCAGAACCGGCCACAGTACGCAAGGCAGCGGAGCCTGGG6040.11652830538133117No Hit
ATACAGGCCGGTCTGCGGGCAAACGCTCACACCTTTGACACCGG5870.11324853519675726No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5600.10803948843302227No Hit
AAACAGACGGCCCTGCAGCAGCGGATCGTCGGTGAAGTCCACAC5520.10649606716969337No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5370.1036021523009517No Hit
AGCGCCGGTCGGAGGCGGGCAAACGTAGAAGTTTGCGTCGGTGT5260.1014799480638745No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)