FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007931292

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931292
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences553510
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG46230.8352152625968816No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13780.24895665841628878No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10770.19457643041679465No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10040.18138787013784755No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9240.16693465339379596No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8940.1615146971147766No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8070.1457968239056205No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7680.13875088074289532No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7630.13784755469639212No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7220.13044028111506567No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6110.11038644288269407No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6020.10876045599898829No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5940.10731513432458312No Hit
GAACGTACCACTGACGGTAAACTGGATCCGC5580.1008111867897599No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)