FastQCFastQC Report
Sun 21 May 2023
EGAF00007931294

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931294
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences509351
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG42190.8283089657230476No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC28780.5650327573716357No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA24720.4853234802719539No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT20940.4111113946963882No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT18060.3545688533054809No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC16620.3262975826100273No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG16420.3223710172356587No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA16300.32001507801103757No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG14630.2872282571350601No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG13750.2699513694878385No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC13510.2652394910385962No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13260.26033128432063546No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT13210.2593496429770433No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG12530.24599932070419026No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA12220.23991314437391895No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC11190.2196913326959209No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG9730.1910274054630304No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG9550.1874934966260987No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG8790.17257254820349818No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA8610.1690386393665665No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG8380.16452308918604264No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC8270.16236347823013994No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT8200.16098918034911094No Hit
ATGTCTGACGAAGGCCCGGGCACCGGTCCGG8020.15745527151217922No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA7870.1545103474814028No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT7550.1482278428824131No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC7460.14646088846394725No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6630.13016564216031773No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6350.12466845063620174No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG6200.12172352660542533No Hit
GTGGCCCCGCTGCGTGCGTCCATGGGTCCGG5960.11701164815618306No Hit
ATGAGCGACGAAGGTCCGGGTACCGGCCCGG5580.10955117394488281No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG5170.10150171492742727No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC5160.10130538665870882No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5160.10130538665870882No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)