FastQCFastQC Report
Wed 31 May 2023
EGAF00007931296

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931296
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences560219
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG48120.8589498035589653No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA25830.46106968881812294No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC13960.2491882638753773No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11390.2033133471017584No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG11350.20259934061500948No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11170.1993863114246393No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG10800.19278175142221168No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10290.1836781687161628No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9280.16564950492575226No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7670.13691074383410773No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6260.11174201517620788No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)