FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007931299

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931299
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences507709
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT30120.5932532218258885No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA16770.3303073217138164No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG15010.29564179480765557No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA11450.22552288811110302No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG10360.20405389701581025No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA10130.19952374293148242No Hit
CATCATCGGATCATCGAAGTACACGCGAGTTTCGGCAGAAGCAT9820.19341788307869273No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC9560.1882968393311917No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT9410.1853423910153257No Hit
CAGCGCCGGCAGGGTTTCTACGGAGTGAGACGGGAAAGCCCAGT9120.1796304576046515No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC7900.1556009446356082No Hit
GTGGTCACCGTTGGTGGAGGTGGTGCCGGAGAACGTATGGGTGT7740.15244953309868448No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT7680.1512677537723381No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT7620.1500859744459917No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG7470.14713152613012573No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7450.14673759968801026No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7120.1402378133931051No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6450.12704127758223707No Hit
CATCGGAGAAGACAGTTTTGCTTTGCGAATACGGCTCGGGGTGG6260.12329897638214016No Hit
CAGTGGGTCACCCAGGGACAGCTGGCTGTTCACCTCTTTACGCA5690.11207207278184944No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5670.11167814633973398No Hit
TTCCTGGCCTTCTTCACCCTCATCACCGTCACCACCTTCATCGC5500.10832977158175255No Hit
ACCCTGAACTGGGGTAGAGGTTACAGTTTGCGCACGAGCAGAGG5400.10636013937117522No Hit
GACCGGCCATTCCGGGGTGCGCGGACGTGGACGACCGTGAATAG5250.10340569105530924No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)