FastQCFastQC Report
Wed 31 May 2023
EGAF00007931300

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931300
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences507709
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA30570.6021165667734865No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT23600.4648332016962473No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC15890.31297455826073595No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG15560.30647477196583084No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12650.24915847463803084No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG10120.19932677971042467No Hit
GGCGACAAACAGAGCAACGTTGTCATCCAGA10040.19775107394196278No Hit
GAAAGCGCACTGGATTGGTTCCTGCGCCCGA9600.18908469221542262No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9510.187312023225903No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8910.1754942299624391No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA8010.15776754006724325No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7980.15717665040407006No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT7760.15284345954079995No Hit
CACTCTGCTAGCGCATCTACCACCGCCCTGA7660.15087382733022262No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7550.1487072318985876No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG7230.14240440882474015No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7170.14122262949839376No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT6690.13176839488762263No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6170.12152630739262058No Hit
GAAGAGGAAGATGACGACTCCAGCGATACTG6120.12054149128733192No Hit
ATGGAATCTTCTGCCAAACGTAAAATGGATC5880.11581437398194634No Hit
GCACCAACCTGCAACATCAAAGTAACCGTTT5740.1130568888871381No Hit
CAGCGCGGTGATCCGTTCGACAAAAACTACG5580.1099054773502144No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA5550.1093145876870412No Hit
ACTAGCGAACCGTGCGAAGCGCTGGACCTGT5510.10852673480281026No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5140.10123909562367418No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)