FastQCFastQC Report
Sun 21 May 2023
EGAF00007931301

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931301
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences491094
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT29020.5909255661848852No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG15560.3168436185333154No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA15360.31277107844933966No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA11090.22582234765645678No Hit
CATCATCGGATCATCGAAGTACACGCGAGTTTCGGCAGAAGCAT10250.20871767930375854No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG9570.1948710430182409No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA9340.19018762192166877No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC9300.1893731139048736No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT9150.18631870884189178No Hit
CAGCGCCGGCAGGGTTTCTACGGAGTGAGACGGGAAAGCCCAGT8740.17797000166974145No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT8010.16310523036322985No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7540.15353476116588677No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT7530.15333113416168798No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG7320.14905496707351343No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC7260.1478332050483207No Hit
GTGGTCACCGTTGGTGGAGGTGGTGCCGGAGAACGTATGGGTGT7230.14722232403572433No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7050.14355703796014613No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6290.12808138564103816No Hit
CATCGGAGAAGACAGTTTTGCTTTGCGAATACGGCTCGGGGTGG5820.1185109164436951No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5790.11790003543109874No Hit
TTCCTGGCCTTCTTCACCCTCATCACCGTCACCACCTTCATCGC5360.10914407425055082No Hit
CAGTGGGTCACCCAGGGACAGCTGGCTGTTCACCTCTTTACGCA5360.10914407425055082No Hit
ACCCTGAACTGGGGTAGAGGTTACAGTTTGCGCACGAGCAGAGG5060.10303526412458715No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG4950.10079536707840048No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)