FastQCFastQC Report
Wed 31 May 2023
EGAF00007931302

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931302
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences491094
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG40610.8269292640512814No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA28910.5886856691386986No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT23820.48503952400151495No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG16230.3304866278146343No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC14720.29973895018061714No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12120.24679592908893205No Hit
GGCGACAAACAGAGCAACGTTGTCATCCAGA10330.21034669533734887No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG9080.18489331981250026No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9010.18346793078310872No Hit
GAAAGCGCACTGGATTGGTTCCTGCGCCCGA8920.18163528774531962No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8050.163919738380025No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT7620.15516377719947708No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA7400.15068398310710374No Hit
CACTCTGCTAGCGCATCTACCACCGCCCTGA7200.14661144302312795No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT6970.14192802192655582No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6960.14172439492235703No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG6840.13928087087197158No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6740.1372446008299837No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6310.12848863964943577No Hit
GAAGAGGAAGATGACGACTCCAGCGATACTG5750.11708552741430357No Hit
ATGGAATCTTCTGCCAAACGTAAAATGGATC5600.11403112235132175No Hit
GCACCAACCTGCAACATCAAAGTAACCGTTT5330.10853319323795443No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA4990.10160987509519562No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4940.10059174007420169No Hit

[OK]Adapter Content

Adapter graph