FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007931303

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931303
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences405840
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC13100.3227873053420067No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT10650.2624186871673566No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10210.2515769761482357No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC9360.2306327616794796No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8800.21683422038241673No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA8760.21584861028976937No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC8220.20254287403903018No Hit
GGAAAAGCCGAAGCGACGCAGCGCACGAGTGTCTGCGGTTACAC7520.18529469741770155No Hit
ACCCGGGTCACCCTTATCGCCTTTGTCGCCTTTCGCGCCTACCA7370.18159865957027402No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT7140.17593140153755174No Hit
CAGGGAGGAAGAAGTCACAGAGGCGTTGCAGCGATAGAACATGC6660.16410408042578356No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6390.15745121230041395No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC5550.13675340035481964No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC5030.1239404691504041No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA4880.12024443130297655No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT4850.11950522373349103No Hit
CGCCAGCAGCGCCAGCTGGCGCGGGGAGACCGCGTCGCCAGCAT4640.11433077074709246No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA4360.10743150009856102No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC4320.10644589000591367No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG4140.1020106445890006No Hit

[OK]Adapter Content

Adapter graph