FastQCFastQC Report
Wed 31 May 2023
EGAF00007931304

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931304
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences405840
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA21130.5206485314409619No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC16410.4043465405085748No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10630.2619258821210329No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9900.24393849793021882No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9600.2365464222353637No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9370.23087916420264143No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC9320.22964715158683224No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9000.22176227084565345No Hit
GTGAGCGATGCCGTCGCTAACGGCCTGAAGG7900.19465799329785136No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7520.18529469741770155No Hit
GAAGAGCTGTCCAACGAAGTTCTGCCACCGC7450.1835698797555687No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7320.1803666469544648No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG7300.17987384190814112No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7150.17617780406071357No Hit
TTCGTCGAACTGATGCAGCCGCTGAAACGTT6880.16952493593534398No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5190.1278829095209935No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5130.12640449438202248No Hit
GGCGCCGAAACCGAAGAAGGTGGTGACGATC4960.12221565148827125No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4770.11753400354819632No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC4310.10619948748275183No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC4160.10250344963532426No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC4060.10003942440370589No Hit

[OK]Adapter Content

Adapter graph