FastQCFastQC Report
Sun 21 May 2023
EGAF00007931305

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931305
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences514661
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA21810.4237740959583104No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT19050.37014656249453526No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA18010.34993908611688085No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT16980.3299259123967039No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT13010.2527877573781577No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC12920.25103903346086065No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC12120.23549482086266493No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG10740.20868105413077734No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA9230.17934135285168296No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8540.16593446948573914No Hit
ATCGGAACCGATCTGCAGGCCGGATTTGGTAATGGTTTCGCCAG8360.16243702165114512No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT8150.15835666584411875No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA7400.1437839665333103No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC7330.14242384793096816No Hit
ATCGGAGCCGATCTGCAGGCCGCTTTTGGTAATGGTTTCACCGG7290.14164663730105836No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT7190.1397036107262839No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC7130.13853779478141923No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT6940.13484604428934774No Hit
ATCGGAACCAATTTGCAGACCGGATTTGGTGATGGTTTCGCCAG6860.13329162302952818No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6720.13057138582484393No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT6350.1233821874981784No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG6090.11833031840376482No Hit
ACCAGTAGCAACTACCGCCAGATCGCGGTTCGGGTACGGTGCAA6000.1165815944864678No Hit
ATCGCTAATCTGTACTTTTTTAGCTTCGCGGCCACGAGAACGGG5600.10880948818736995No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5540.10764367224250526No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT5400.10492343503782102No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5390.10472913238034355No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC5250.10200889517565932No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACCAGG5180.1006487765733172No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)