FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007931308

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931308
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences510645
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT41750.8175934357528223No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG19470.38128249566724437No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16390.32096662064643733No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15500.3035376827345808No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC14900.29178783695130667No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA13260.2596715918103575No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG10430.20425148586591468No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9410.1842767480343487No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9300.18212260964074847No Hit
TGCGAATGGGAACAAACCGAAGATAGCGGTC9250.1811434558254756No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9090.17801016361660255No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC8840.17311439454023833No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8780.17193940996191093No Hit
TGCGAGTGGGAACAGACTGAAGACAGCGGCC8740.17115608690969264No Hit
TGCGAATGGGAACAAACCGAAGACTCTGGTC8230.16116871799390967No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8010.15686044120670914No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7740.1515730106042358No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7440.1456980877125988No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7270.1423689647406711No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC6920.13551488803376122No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6540.12807331903768762No Hit
AACTACCCGCGTGATTCTAAAACCATTATCA6380.12494002682881453No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6370.12474419606575997No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5740.11240685799332216No Hit
CAGACCGAGGACAGCGGTCGTGCAGTTGCTG5640.11044855036277648No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG5590.10946939654750364No Hit
GAAGGCCCGTCTACCGGTCCGCGCGGCCAGG5320.1041819659450303No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5310.10398613518197573No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA5150.10085284297310264No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)