FastQCFastQC Report
Sun 21 May 2023
EGAF00007931309

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931309
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences512700
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA18400.35888433781938756No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT16600.3237760873805344No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA15690.30602691632533646No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT13530.26389701579871266No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC12440.2426370196996294No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG11050.2155256485274039No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA10030.19563097327872048No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG9780.19075482738443533No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG9730.18977959820557833No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT9700.1891944606982641No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT9420.18373317729666472No Hit
ATACAGGCCGGTCTGCGGGCAAACGCTCACACCTTTGACACCGG9280.18100253559586502No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA9000.17554125219426564No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG8730.1702750146284377No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG8450.16481373122683832No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACCAGG8090.15779208113906767No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA7850.15311098108055393No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG7830.1527208894090111No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG7710.15038033937975426No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG7190.1402379559196411No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG7070.13789740589038424No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG6660.1299005266237566No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG6500.12677979325141409No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT6320.12326896820752876No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6300.12287887653598596No Hit
GACTTCACGAACACGAATGGTGATCTCACCTTCTTCCACAACGG5800.11312658474741565No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5550.10825043885313047No Hit
TGGACCGGTAACCGGACGGCCACGACGGCCGTTATCGAACAGGG5270.1027891554515311No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG5180.10103374292958844No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)