FastQCFastQC Report
Wed 31 May 2023
EGAF00007931310

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931310
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences512700
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT37490.7312268383070021No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC16790.32748195826019116No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16680.32533645406670564No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13470.26272674078408426No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG11990.23385995708991614No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC11050.2155256485274039No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10960.2137702360054613No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10510.204993173395748No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG9980.19465574409986347No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA9840.1919251023990638No Hit
TCTGGCTACGAAATTGACCACATCGACCTGG9770.19055978154866393No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9690.1889994148624927No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA9610.18743904817632143No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG9410.18353813146089332No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG9290.18119758143163642No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8830.17222547298615173No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8790.17144528964306613No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC8660.16890969377803786No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8340.16266822703335282No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG8170.15935244782523894No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8090.15779208113906767No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG7900.15408621025941097No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG7690.14999024770821143No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7110.13867758923346984No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6840.1334113516676419No Hit
TCCTACACCAACGGCAAACTGACTATCACCC6690.1304856641310708No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6260.12209869319290033No Hit
TCCGGCGACGAAGTTCGCATCCACATGGGCA6000.11702750146284377No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC5700.11117612638970158No Hit
GCGCTGACTCTGTCCCTGCCGAAACAGCAGG5330.10395943046615955No Hit
AACGACCTGTACCGCCGCGTGATCAATCGTA5260.10259410961575971No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG5200.10142383460113127No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5200.10142383460113127No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG5180.10103374292958844No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)