FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007931313

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931313
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences544276
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT27160.49901153091446254No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC25290.46465396232793654No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT25010.45950951355562253No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC19470.35772291998912314No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG16380.3009502531803717No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG16360.3005827925537779No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA15780.2899264343825559No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG14200.26089704488164095No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA13340.24509623793810492No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC12680.23297003726050752No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG11310.20779898433882807No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG9350.17178784293262978No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG8930.1640711697741587No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG8840.16241759695448632No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC6970.12806002836796038No Hit
ACGGCGGAAGGCATACGGGTTGTCTTCGTCTGGCGCATCAATAT6540.12015962489619236No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA6530.11997589458289544No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT5450.10013302074682696No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)