FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007931314

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931314
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences544276
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA57191.050753661745144No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43150.7927963018762539No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT33580.6169663920510917No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA26090.47935238739169095No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA25280.4644702320146396No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA24540.45087418883066677No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC17800.32703995766853583No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG17650.3242840029690819No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG16640.3057272413260919No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG15660.28772167062299275No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC10510.19310055927507366No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG9550.17546244919856838No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8640.15874299068854772No Hit
GACGCTAACGGCAACAACCTGACTTTCGAAC6450.11850605207652No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA5590.10270524513298399No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5550.10197032387979628No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)