FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007931317

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931317
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences498659
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11080.2221959294828731No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7330.14699423854778515No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6440.12914637056585765No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA5830.11691356217375No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)