FastQCFastQC Report
Wed 31 May 2023
EGAF00007931318

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931318
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences498659
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11270.22600614849025086No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10850.21758355910552102No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9470.18990933684140865No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9210.1846953529365759No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6900.13837111132056176No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5510.11049635121395582No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5080.10187322398673242No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)