FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007931319

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931319
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences495236
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT49030.990033034755147No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC45670.9221865938663587No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC39490.79739760437448No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG24780.5003675015548142No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC24250.48966553320033274No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG21420.43252106066602586No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT21160.42727103845439346No Hit
GTACATGTGCGGACGGTGCGGATGGTTATCGAAACCGTGCGGGT20740.4187902333432949No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG17590.3551841950100558No Hit
CGCATCAATAACAGCTACAACGGTACCAGCGCCTTTACCTGCCT15000.3028858968249481No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT13410.2707799917615036No Hit
CCAAACTTCGTCGGCCGCATCACGAGAAGCGGTCTGAGTGACGG12310.2485683593276741No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG11800.23827023883562587No Hit
GCTCTGGTAGCGTGCTTTGGTCTTATCAGTCAGACGCCAGGCTT11570.2336259884176433No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG11210.22635672689384456No Hit
AGCGCCGGTCGGAGGCGGGCAAACGTAGAAGTTTGCGTCGGTGT10780.21767399785152935No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG9410.1900104192748508No Hit
GAACACTACAACTTTTTTGTTGCCGATCAGATAAATACCGGCCG9400.18980849534363414No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG9380.1894046474812009No Hit
TGGACGACGCGGGCGCTGCGGTTTGGTCGGGGTCGGTTTCACAG9370.18920272354998424No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG8980.18132769023253562No Hit
CATCGGAGAAGACAGTTTTGCTTTGCGAATACGGCTCGGGGTGG8860.178904603057936No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA8570.17304880905265368No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG8430.17022187401562083No Hit
TTACGCGTTGACAATACCGTAGGTCGTCAGCGAGATGTTTCCAT8210.16577954752885493No Hit
ACCCTGAACTGGGGTAGAGGTTACAGTTTGCGCACGAGCAGAGG8140.1643660800103385No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG7850.15851028600505618No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA7810.15770259028018965No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG7470.15083717661882418No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT7420.149827556962741No Hit
ACGAATAGTGATGTTGTCATACTTCAGCAGCTCATCCGGGTTGT6980.1409429039892092No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG6810.13751019715852644No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG6690.13508710998392687No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG6660.13448133819027697No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG6660.13448133819027697No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG6480.13084670742837756No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACCAGG6400.1292313159786445No Hit
TGGATCGTTCAGGTCACGGATAGTGGCCTTGGACGTAGCCGGAG5880.11873127155537966No Hit
GCCCGCACCTTCTTCTTCTTCCTCTTCCTCCAGGCCGATGCTAG5260.10621198781994848No Hit
CTGTTCGGTTTCCAGTTCGCCTACGCTCACTTTGGTGTTGTTAC5200.10500044423264869No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)