FastQCFastQC Report
Sun 21 May 2023
EGAF00007931322

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931322
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences493902
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG39880.8074476313114748No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT35100.7106672983709319No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11130.22534834845779123No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7380.14942235504209336No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6900.13970382788488406No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6750.1366667881482561No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6340.12836554620147317No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6050.12249393604399253No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5770.1168247952022871No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5520.11176306230790724No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5440.11014330778170568No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5350.10832108393972893No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5240.1060939214662018No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC5150.10427169762422504No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)