FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007931326

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931326
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences549652
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA21760.3958868520445664No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT14500.2638032791657267No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10580.1924854271429923No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9570.1741101642493796No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9110.1657412326344669No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6050.11006964406569976No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6010.10934191088179429No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5750.10461164518640886No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5660.10297424552262158No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)