FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007931328

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931328
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences528339
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43600.8252277420368362No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA20450.3870620946021399No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT15270.289018982130791No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9710.18378351777930457No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8290.1569068344377379No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5810.10996727479894537No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5790.10958872996314865No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5780.1093994575452503No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5580.10561400918728317No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)